Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKKSK------
1LJ9 Chain:A ((2-145))
-----------TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED--ASNKKIKRIYATEKGKNVYPIIVRENQHSNQVA--LQGLSEVEISQLADYLVRMRKNVSEDWEFVKKG
General information:
TITO was launched using:
RESULT:
Template:
1LJ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58581 for 879 contacts (-66.6/contact) +
2D Compatibility (PS) -14638 + (NN) -4681 + (LL) 1120
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -83030.0 ( -94.46 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1LJ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LJ9-query.scw
PDB file :
Tito_Scwrl_1LJ9.pdb
: