Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGYYSPQEVTEITIEKGTQKA-------NSSTLTLVLLGFLGGAFISLGYLLYIRAVGTMPHEWGSFATLIGASL-FPVGLVCILLGGGELITGNMMAVAIAWYDKKISFQQLLRNWAIVSVMNLVGAFFVAYFFGHFVGLTEGDFLPKTLA-TAGAKINDPFWVAFVSGIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGYYSWADF---IWNVIPVYLGNVVGGAVFVSL-FYFLAYKKNAPKKVKEEIHQPIEEN
3TDX Chain:D ((8-259))
------------TLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILL-IFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIMTGTEVFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVG-TGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----------------
General information:
TITO was launched using:
RESULT:
Template:
3TDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -256511 for 2101 contacts (-122.1/contact) +
2D Compatibility (PS) -24554 + (NN) -7952 + (LL) 2112
1D Compatibility (HY) -26000 + (ID) 4000
Total energy: -316905.0 ( -150.84 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_3TDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDX-query.scw
PDB file :
Tito_Scwrl_3TDX.pdb
: