Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELTKENFQKLDLIHLSLENRHSMSEIIDILSESYIEITQSGVVK-DYAYYKSLTTLG----DSNLAIMEYDVKILDETKVLSYYKLKNLS----E----NNYTMRSNIWIFE-NGSWKLTFHQGTRII
3D9R Chain:A ((8-133))
--EELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI-
General information:
TITO was launched using:
RESULT:
Template:
3D9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20371 for 794 contacts (-25.7/contact) +
2D Compatibility (PS) -11916 + (NN) -4 + (LL) 516
1D Compatibility (HY) 2800 + (ID) 500
Total energy: -29475.0 ( -37.12 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_3D9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D9R-query.scw
PDB file :
Tito_Scwrl_3D9R.pdb
: