Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKAVQLTEFVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHIELQYTARASHALEKAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQAVISAREIGKKLLGALGDEPKNDRPSYI
3NWG Chain:A ((2-160))
----------------------------------------MESIGLVEVNSIA-RGIEAADAMLKAAQVDLLEAKP---V----CPGKYIVLICGDVAAVQSSVTAGKTMAAHSVLDDFILPNVHPQV------LTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRI---GMGIGGKSFVTLTGDVASVESSVAAGVMLASE-----------------
General information:
TITO was launched using:
RESULT:
Template:
3NWG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84136 for 1345 contacts (-62.6/contact) +
2D Compatibility (PS) -16966 + (NN) -6650 + (LL) 3920
1D Compatibility (HY) -8000 + (ID) 1850
Total energy: -113682.0 ( -84.52 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3NWG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWG-query.scw
PDB file :
Tito_Scwrl_3NWG.pdb
: