Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGSGLVTVMVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLQKGL
4PPD Chain:F ((11-98))
---ALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPKGI
General information:
TITO was launched using:
RESULT:
Template:
4PPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44142 for 682 contacts (-64.7/contact) +
2D Compatibility (PS) -9787 + (NN) -5232 + (LL) 48
1D Compatibility (HY) -10800 + (ID) 3650
Total energy: -73563.0 ( -107.86 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_4PPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PPD-query.scw
PDB file :
Tito_Scwrl_4PPD.pdb
: