Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKAT--RNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIEN-FMGDGV-----AVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2JFZ Chain:A ((3-255))
----IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQ-QGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAI---VEYLQQKYALKNNACTFPKVEFHASGDVIWLERQAKEWLKL------------
General information:
TITO was launched using:
RESULT:
Template:
2JFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174567 for 2152 contacts (-81.1/contact) +
2D Compatibility (PS) -25802 + (NN) -5829 + (LL) 1840
1D Compatibility (HY) -22000 + (ID) 4250
Total energy: -230608.0 ( -107.16 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2JFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFZ-query.scw
PDB file :
Tito_Scwrl_2JFZ.pdb
: