Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFAVIQFPG--SNCDLDMLHAIRDS---LGEEAEYIWHAE-----------TSLAGFDAVLLPGGFSYGDYLRTGAIAKFSSIMPEVLRFAEMGKPVLGVCNGFQILTEIGLLPGALIRNNNL----------------------------HFICKTVPLRVANASTMFTELYEEGEIIQVPVAHGEGNYYCDDETLLKLKENNQIVFTYDSVNPNGSRADIAGIVNERGN-VLGMMPHPERAVEEIIGGTDGLRLFESVVKAWKEEQVNA
3NVA Chain:A ((294-534))
INIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG--SRG-------AEGKIKAIKYAREHNIPFLGICFGFQLSIVE--FARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKE-GTIAYQLYG-KKVVYERHRHRYEVN---PKYVDILEDAGLVVSGIS---ENGLVEIIEL---PSNKFFVATQAHPEFKSRP----TNPSPIYLGFIRAVAS-----
General information:
TITO was launched using:
RESULT:
Template:
3NVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122284 for 1631 contacts (-75.0/contact) +
2D Compatibility (PS) -21548 + (NN) -11230 + (LL) 1724
1D Compatibility (HY) -10000 + (ID) 1550
Total energy: -164888.0 ( -101.10 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3NVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NVA-query.scw
PDB file :
Tito_Scwrl_3NVA.pdb
: