Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VLQTEMKVIQQTEIADKVYELILTGECV---AGMSPGQFLMLKPSRSD--LLMRRPISICSYDKTAKTCILLYRVE--GDGTRDFSK-LSEGDTIDVLGPLGKGFDIDTTPAPKTALLIGGGIGVPPMYQLGKELAEK--GVQVMFVNGFQSAKDSFYAQEMAEYG----TV--H-IATV-DG------SLGTQGFVTD-ITKNFP-EEPDVIYSCGPKAMLQAVKASFPET---KTYLSLEERMACGIGACYACVCPKADDTNKQFKVCEDGPVFRADEVKL |
1GVH Chain:A ((153-392)) | ---RDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDG-KGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGD-FFMAVA-DDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGP------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92708 for 1626 contacts (-57.0/contact) +
2D Compatibility (PS) -22818 + (NN) -4667 + (LL) 2236
1D Compatibility (HY) -7200 + (ID) 1950
Total energy: -127107.0 ( -78.17 by residue)
QMean score : 0.441
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