Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MELLNRTEKLLLQNEKNWELYLS-NREEAKPFDFYKD----MKPFVDEAKNSADAFLELAIPWVNKERPPYLGELQLRQACDNVQMTAVSAFNGKSFYKHFLDHYQSTKYTLTRVRDFLKRKEELM
2X5R Chain:A ((1-124))
GAMARVGPKIEITHGGKKYTVFSKVTHLVPRTENGEEAEYVVFGPEKEGVISVVVLAPKDLNEEALALRVKWFNDTKPRCVKCGAAYNGKNHFRVVAIR--NGTYYLDAVCDKCEPR---ITWLSAIVI------
General information:
TITO was launched using:
RESULT:
Template:
2X5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9432 for 810 contacts (11.6/contact) +
2D Compatibility (PS) -11123 + (NN) 3948 + (LL) 1240
1D Compatibility (HY) -7600 + (ID) 950
Total energy: -5053.0 ( -6.24 by residue)
QMean score : 0.028
(partial model without unconserved sides chains):
PDB file :
Tito_2X5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X5R-query.scw
PDB file :
Tito_Scwrl_2X5R.pdb
: