Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKS-HVFQLMHDDIVIGIICLFPL-NNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKH-FIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
3KKW Chain:A ((63-181))
-------------------------QLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDPDG-----------RRVALIQMDKPLE-
General information:
TITO was launched using:
RESULT:
Template:
3KKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86669 for 790 contacts (-109.7/contact) +
2D Compatibility (PS) -12801 + (NN) -5368 + (LL) 2064
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -105774.0 ( -133.89 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3KKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KKW-query.scw
PDB file :
Tito_Scwrl_3KKW.pdb
: