Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFTKKRGLML--------------LAAVLL---TVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNVPDKIKYLAEK |
2JTD Chain:A ((1-122)) | EEEMKRLLALSQEHKFPTVPTKSELAVEILEKGQVRFWMQAEKLSSNAKVSYIFN--------EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVLIGDVYKKLQKEAEF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 91 for 657 contacts (0.1/contact) +
2D Compatibility (PS) -10771 + (NN) 5056 + (LL) 308
1D Compatibility (HY) 0 + (ID) 1250
Total energy: -6566.0 ( -9.99 by residue)
QMean score : 0.253
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