Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVVWSKEGCHYCKDVKDFLIEQKIVFQDIDVTDHDYLREVLQAKYGICHVPVVEIGNIENGTYQAVTEIG-LEHLEKALFEKGEVK
2KHP Chain:A ((6-90))
-VDVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLKTGK---
General information:
TITO was launched using:
RESULT:
Template:
2KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50720 for 605 contacts (-83.8/contact) +
2D Compatibility (PS) -9513 + (NN) -4139 + (LL) 568
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -68404.0 ( -113.06 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_2KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHP-query.scw
PDB file :
Tito_Scwrl_2KHP.pdb
: