Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIVLVCAAGMSTSLLVTKMRKAAEERGETCEIEAYSIAEVSNLIDDADVVLLGPQVRYQKKTVDELAAGKIPVDVIDMAAYGTMNGEKVLGQALDLINGFQK
1IIB Chain:A ((3-105))
KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN-KPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAA
General information:
TITO was launched using:
RESULT:
Template:
1IIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84935 for 789 contacts (-107.6/contact) +
2D Compatibility (PS) -11147 + (NN) -3509 + (LL) 64
1D Compatibility (HY) -7600 + (ID) 2150
Total energy: -109277.0 ( -138.50 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_1IIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIB-query.scw
PDB file :
Tito_Scwrl_1IIB.pdb
: