Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK
1N34 Chain:L ((5-122))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT-----
General information:
TITO was launched using:
RESULT:
Template:
1N34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27170 for 797 contacts (-34.1/contact) +
2D Compatibility (PS) -12666 + (NN) -5430 + (LL) 1028
1D Compatibility (HY) -11200 + (ID) 4500
Total energy: -59938.0 ( -75.20 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_1N34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N34-query.scw
PDB file :
Tito_Scwrl_1N34.pdb
: