Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVVQLNNQYIND-ENLKKRYEAEELRRKNRLMGWVLIF----VMLLFILPTYNLVKSYRTLQERR----QEVVKLTKDYQTLTNRTENQKLLAKQLKNPD---------YVQKYARAKYYFSKTGEMIYPLPDLLPK
4YHV Chain:A ((11-145))
-EKPTVYHCKVFQFKNLQNPKIRFKLKMNSKELSLKGLCLRIRDDGPGIIIVVGNEKSCKFYENLVMKRIKWNEDFELHTNTGDIKMDMHNNSISKTWEGYLQDCKFKGWFMKVCNDQDSLLRTLGQFDSEHFYSP-----
General information:
TITO was launched using:
RESULT:
Template:
4YHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24803 for 753 contacts (-32.9/contact) +
2D Compatibility (PS) -13021 + (NN) -4072 + (LL) 408
1D Compatibility (HY) -400 + (ID) 850
Total energy: -42738.0 ( -56.76 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_4YHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHV-query.scw
PDB file :
Tito_Scwrl_4YHV.pdb
: