Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKDLQKYQGIIPAFYACYDDKGDICPERVKALTNYFIDKGVQGLYVNGSSGECIYQSVADRKLVLENVMSVAKGKLTVIAHVACNNTKDSVELAMHAEAIGVDAIAAIPPIYFRLPEYAIADYWNTISQAAPQTDFIIYNIPQLAGVALTSDLYRKMLQNPQVIGVKNSSMPVQDIQNFVAIGGENH--IVFNGPDEQFLGGRLMGAAAGIGGTYGVMPELYLTLNQLIVDKDLEKARELQFTINDIITKLCSGHGNMYAVIKSVLEINEQLTIGSVRLPLASVTEEDKPIIKEAAEMIRHAKKQFC
3LCH Chain:C ((28-318))-------RGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTS---GDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLIK--TGRFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER----


General information:
TITO was launched using:
RESULT:

Template: 3LCH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197690 for 2535 contacts (-78.0/contact) +
2D Compatibility (PS) -31250 + (NN) -15753 + (LL) 1152
1D Compatibility (HY) -22400 + (ID) 4700
Total energy: -270641.0 ( -106.76 by residue)
QMean score : 0.577

(partial model without unconserved sides chains):
PDB file : Tito_3LCH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3LCH-query.scw
PDB file : Tito_Scwrl_3LCH.pdb: