Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIP-ALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIVWLAGVLFVDVAGAVWLASYTNIPLDKSLLQNLVFIPGDTIKAIIAAVVAVKYKDSFFLTEK-
3P5N Chain:A ((10-188))
-QQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFS------------MGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKR
General information:
TITO was launched using:
RESULT:
Template:
3P5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155160 for 1273 contacts (-121.9/contact) +
2D Compatibility (PS) -17190 + (NN) -8531 + (LL) 1064
1D Compatibility (HY) -13200 + (ID) 1250
Total energy: -194267.0 ( -152.61 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_3P5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P5N-query.scw
PDB file :
Tito_Scwrl_3P5N.pdb
: