Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKVRYGVVSTAKVAPR-FIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAYPNI-DHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTA-TFP-KGQSDSQSKLLLQLSNGVLVDIFLTTRLNL-PHEMIIYGTEGRLIIPHFWKTTHAK-------------------LVRNDTSA-RTI-QVDMVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGK |
| 3KUX Chain:A ((5-341)) | ADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA---DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIRQRWREQ---GGGIWYDLGPHLLDQALQLFGL-PETLNVDLGMLRPGSQSVDYFHAVLSYPGQR-VVLHSTVLAAAETARYIVHGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNYPAYYAGIRDAIWGTA--PNPVPATEAIKVMELIELGIASDQQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KUX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193148 for 2493 contacts (-77.5/contact) +
2D Compatibility (PS) -33042 + (NN) -9544 + (LL) 1172
1D Compatibility (HY) -8400 + (ID) 3300
Total energy: -246262.0 ( -98.78 by residue)
QMean score : 0.431
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