Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIYFKASVKPFVPKSVVREV-EKMSEE
1VLH Chain:F ((14-169))
---KAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDLDGVKVDVHHG-LLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKLK--
General information:
TITO was launched using:
RESULT:
Template:
1VLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105307 for 1199 contacts (-87.8/contact) +
2D Compatibility (PS) -16949 + (NN) -8581 + (LL) 632
1D Compatibility (HY) -16400 + (ID) 3200
Total energy: -149805.0 ( -124.94 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1VLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLH-query.scw
PDB file :
Tito_Scwrl_1VLH.pdb
: