Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILREFCAENLTDLTRLDKAIISRVELCDNLAAGGTTPS----YGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ--G--LPLVFHMAFDVIPKSDQKKAIDQLVALGFTRIL--L-HGSSNG-EPIIENIKHIKALVEYAN---NRIEIMVGGGVTAENYQYICQETGVRQAHGTRITQ
1RPX Chain:A ((28-206))
------------QVKAIEQAGCDWIHVDV--MDGRFVPNITIGPLVVDSLRPITD-LPLDVHLMIVEP--------------DQRVPDFIKAGADIVSVHCEQSST----IHLHRTINQIKSLGAKAGVVLNPGT-------PLTAIEYV-LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF
General information:
TITO was launched using:
RESULT:
Template:
1RPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102937 for 1217 contacts (-84.6/contact) +
2D Compatibility (PS) -17444 + (NN) -4639 + (LL) 3040
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -130080.0 ( -106.89 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1RPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPX-query.scw
PDB file :
Tito_Scwrl_1RPX.pdb
: