Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIA---ETFSIILDRINQ
3UXM Chain:C ((2-207))
---GLFVTLEGPEGA---TNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLAR--AA----LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERL--
General information:
TITO was launched using:
RESULT:
Template:
3UXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66658 for 1526 contacts (-43.7/contact) +
2D Compatibility (PS) -21648 + (NN) -14818 + (LL) 1336
1D Compatibility (HY) -14400 + (ID) 4150
Total energy: -120338.0 ( -78.86 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3UXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UXM-query.scw
PDB file :
Tito_Scwrl_3UXM.pdb
: