Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MTEKDLLQLVVKAADEKRAEDIVILDLQPV--TSVADYFVIMSASNSRQLEAIADNIREQVKGNGGDASHLEGDSK--------AGWVLLDLNSVVVHIFSEDERQHYNLEKLWHEAPLLDAEDFMTE------
4DQJ Chain:A ((14-150))
SRVRFTTAEVDSAVARISQKIGVPASYYQFLIPIENFVVAGGFETTVSGSFRGLGQFNRQTWDGLRRLGRNLPAFEEGSAQLNASLYAIGFLYLENKRAYEASF-KGRVFTHEIAYLYHNQGAPAAEQYLTSGRLVYP
General information:
TITO was launched using:
RESULT:
Template:
4DQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25851 for 773 contacts (-33.4/contact) +
2D Compatibility (PS) -12671 + (NN) -9023 + (LL) -28
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -51373.0 ( -66.46 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_4DQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DQJ-query.scw
PDB file :
Tito_Scwrl_4DQJ.pdb
: