Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLRNRSFLTLLDFSTAEVEFLLKLSEDLKRAKYAGIEQQKLVGKNIALIFEKDSTRTRCAFEVAAHDQGAHVTYLGPTGSQMGKKETSKDTARVLGGMYDGIEYRGFSQETVETLAEFSGVPVWNGLTDADHPTQVLADFLTAKECLHKPYKDIRFTYVGDGRNNVANALMIGASIVGMTYHLVCPKELEPDPELLSKCQEIAKTTGASIEITADIAEGVRDSDVLYTDVWVSMGEPDEVWKERIALLEPYRITQEMLNMTENPNVIFEHCLPSFHNIDTKVGYDIYEKYGLKEMEVSDEVFEGPHSVVFQEAENRMHTIKAVMVATLGD |
| 4NF2 Chain:C ((33-331)) | ---LNTKDLLTLEELTQEEIISLIEFAIYLKKNKQEPLLQGKILG----LIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNT-FKGIKLAYVGDG-NNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGE--EEKYTLFQPYQINKELVKHAKQ-TYHFLHCLPAH-----------------REEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151465 for 2622 contacts (-57.8/contact) +
2D Compatibility (PS) -32452 + (NN) -17775 + (LL) 1496
1D Compatibility (HY) -26400 + (ID) 6300
Total energy: -232896.0 ( -88.82 by residue)
QMean score : 0.557
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