Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKINKDIRTFIDN--KQIPSVKTSEITASFKTSMENQSSKMKLDQLTRLLSDIEAFGKRLTKSRNFKDLARFKGLVKRFVKEAVDSGLSHETSKSFDLYGNSRTLGLVKEIDDKLIQLTEEMMDQEKPAIDLLERIGEIKGLLINLYT
2KHQ Chain:A ((1-110))
MITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIK--RTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDDAIHEGY------------------VIKNPTYKAELHASVLEHHHHHH-------------------
General information:
TITO was launched using:
RESULT:
Template:
2KHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18922 for 746 contacts (-25.4/contact) +
2D Compatibility (PS) -10822 + (NN) -185 + (LL) 2368
1D Compatibility (HY) -4000 + (ID) 450
Total energy: -32011.0 ( -42.91 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2KHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHQ-query.scw
PDB file :
Tito_Scwrl_2KHQ.pdb
: