Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVSLHDDERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPIQKGKIVDLCTGNGIVPLLLSTRS-KADILGVEIQERLHDMAVRSVEYNKLDDQIQIIHDDLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNMNEHLRIARHEIHCTLEDVISVSSKLLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRPDLKILPPLFVYDEQNEYTKEIRTILYGDK |
3TM4 Chain:A ((217-350)) | --------------------------------------------DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS--QYVDSVDFAISNLPYG------------------SMIPDLYMKFFNELAKVLEKRGVFITTEKK----AIEEAIAENGFEIIHHR---------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49479 for 961 contacts (-51.5/contact) +
2D Compatibility (PS) -13466 + (NN) -7475 + (LL) 8812
1D Compatibility (HY) -1600 + (ID) 1250
Total energy: -64458.0 ( -67.07 by residue)
QMean score : 0.445
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