Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGK---------DAIPVLVEALKEE-GSLCNIAAAVLGEFGEDA------SEAAEELSCLLKSHAEDTRMAAAISLMRIGKP---------SLPFVIKIAQESEGQSCFWASWCIAWIDPSC----IEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
4LAC Chain:A ((34-218))
------PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFIVELAEDAKWRVRLAIIEYMPLLAGQLGVEYFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA-KSLQKIGP--------
General information:
TITO was launched using:
RESULT:
Template:
4LAC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93138 for 1126 contacts (-82.7/contact) +
2D Compatibility (PS) -16444 + (NN) -8862 + (LL) 384
1D Compatibility (HY) -7600 + (ID) 1200
Total energy: -126860.0 ( -112.66 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_4LAC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAC-query.scw
PDB file :
Tito_Scwrl_4LAC.pdb
: