Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTDILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNIHHPQIPGFIDEFIIDGQAYYVMQFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIIND---GRLCLIDFGLAKQLTPEE--------MEEIK-VRKQDDFFDLGETLLFLLYSQYK--GKKK-K-------N-----GTWLEELTLTKEVTLLLKRLLGIEEE-YQHTASIREDLNRAIQSVT
3UC3 Chain:A ((18-293))
--------------------DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA----IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERIC-NAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYS-------PAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFE----PRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTH---------
General information:
TITO was launched using:
RESULT:
Template:
3UC3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154737 for 1517 contacts (-102.0/contact) +
2D Compatibility (PS) -23056 + (NN) -13424 + (LL) 3632
1D Compatibility (HY) -14000 + (ID) 2350
Total energy: -203935.0 ( -134.43 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3UC3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UC3-query.scw
PDB file :
Tito_Scwrl_3UC3.pdb
: