Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMWRNASMNHSKRNDANDFDSMDEWLRQFFEDPFAWYDETLPIDLYETSQQYIIEADLTFLQPTQVTVTLSGCEFILTVKS---------SGQTFEKQMMLPFYFNDKNIQVEC-ENQILTVAVNKETEDGSSFSLQFPLS
4M5S Chain:A ((2-86))-------------------------------------------MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQV------------


General information:
TITO was launched using:
RESULT:

Template: 4M5S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 222 -25036 -112.77 -333.81
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -112.77
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.791

(partial model without unconserved sides chains):
PDB file : Tito_4M5S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4M5S-query.scw
PDB file : Tito_Scwrl_4M5S.pdb: