Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNQLIQAQKKLLPDLLLVMQKRFEILQYIRLTEPIGRRSLSASLGISERVLRGEVQFLKEQNLVDIKTNGMTLTEEGYELLSVLEDTMKDVLGLTLLEKTLKERLNLKDAIIVSGDSDQSPWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGLGEDVKNQANTICAHMAEKASGTYRLLFVPGQLSQG-AYSSIIEEPSVKEVLNTIKSASMLVHGIGEAKTMA--QRRNTPLED-LK-KIDDNDAVTEAFGY-YFNADGEVVHK---VHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPR-NTVLVTDEGAAKKLLRDE
3KV1 Chain:A ((9-262))---------------------------------------------------------------------------------------------SVQLEQKLVEKFNLKRALISLDQPNT-NEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIV-TQRNARFVSAIGGTH---IINADHICRRLAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQARKAEFALVGIGDMDENSHMVKLGFFTPKEFVEARLNDGIVGDIGGFDFFKLDGTDADTLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGVID-VLATSVSCAMALLNL-


General information:
TITO was launched using:
RESULT:

Template: 3KV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1429 -40025 -28.01 -166.77
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -28.01
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.505

(partial model without unconserved sides chains):
PDB file : Tito_3KV1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KV1-query.scw
PDB file : Tito_Scwrl_3KV1.pdb: