Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAFTLYPAIDMRNGKCVRLVQGDYNKETIYGDSPYDMAELFEKEGAEWIHLVDLDGAKEGKRVNDRHVIEIAQKLNLKVEIGGGIRSENDVYEYLSAGVERVILGSSAVSNPPFVKKMLKQYGEKIAIGLDAR--NG--FVSTEGWLETSTLKATELGKELANEGAEVFIFTDIATDGMLSGPNVKSTVELAKETGKSVIASGGVSSVADLEALA---RNEADGVSGAIIGKALYTNQFTLSEALERVKRK
2Y88 Chain:A ((1-243))-MPLILLPAVNVVEGRAVRLVQGKAGSQTEY-GSAVDAALGWQRDGAEWIHLVDLDAAFGR-GSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETD-GGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTH---RGVEGAIVGKALYARRFTLPQALAAVR--


General information:
TITO was launched using:
RESULT:

Template: 2Y88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1439 -73607 -51.15 -311.89
target 2D structure prediction score : 0.77
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -51.15
2D Compatibility (Sec. Struct. Predict.) : 0.77
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.648

(partial model without unconserved sides chains):
PDB file : Tito_2Y88.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Y88-query.scw
PDB file : Tito_Scwrl_2Y88.pdb: