Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHN-VTFYDALYVALATALDVPLLTGD-SRLAAAPGLPCEIKLVR
3TND Chain:A ((1-132))
MLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCIS-SVTLMELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIAGHARSRGLIIVTNNTREFERVGGLR--TEDWS
General information:
TITO was launched using:
RESULT:
Template:
3TND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79983 for 995 contacts (-80.4/contact) +
2D Compatibility (PS) -14275 + (NN) -3068 + (LL) 20
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -100056.0 ( -100.56 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_3TND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TND-query.scw
PDB file :
Tito_Scwrl_3TND.pdb
: