Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWL--LSNDNARTARLTRLFATIVRHQHLAGGGVEVARGAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAEHCPAYLES-TKPENVPYYQRFGFRVTREIALPD----AGPPLWAMWREPR----------
4FD5 Chain:A ((7-222))
NNIRFETISSKYYDDVIEHLRQTFFADEPLNKAVNLTRPGQGHPLLEQHSLSTLKDNVSIMAISNDGDIAGVALNGILYGNTDIEKSREKLNEIQDESFKKIFKLLYEQNLKIN--LFKQFDVDKIFEIRILSVDSRFRGKGLAKKLIEKSEELALDRGFQVMKTDATGAFSQRVVSSLGFITKCEINYTDYLDENGEQIFVVDPPHEKLKIMCKVIN
General information:
TITO was launched using:
RESULT:
Template:
4FD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68555 for 1458 contacts (-47.0/contact) +
2D Compatibility (PS) -20489 + (NN) -6605 + (LL) 116
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -100583.0 ( -68.99 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_4FD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FD5-query.scw
PDB file :
Tito_Scwrl_4FD5.pdb
: