Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MRILVTGGVRSGKSTHAEALLGDAADVVYVAPGRPAAGSDPDWDARVALHRARRPPTWLTVETADVATALSEARSPVLVDCLGTWLTAIMDGEALWSAATADVYAVLEARLDGLCAALTG----LPTAIVVTNEVGLGVVPSHSSGVLFRDLLGTINRRVAAVCDEVHLVIAGRVLKL-
1Y63 Chain:A ((6-179))
EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-------YTETHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSS---------ELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK
General information:
TITO was launched using:
RESULT:
Template:
1Y63.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85754 for 1190 contacts (-72.1/contact) +
2D Compatibility (PS) -16234 + (NN) 475 + (LL) 1380
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: -103733.0 ( -87.17 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1Y63.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y63-query.scw
PDB file :
Tito_Scwrl_1Y63.pdb
: