Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDQRWLIDKSALVRLTDSPDMEIWSNRIER-GLVHITGVTRLEVGFSAECG--EIARREFREPPLSAMPVEYLTPRIEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSGLTVL-HVDKDFDAIAALTGQKTERLTHRPPSA
3TND Chain:A ((1-132))
--MLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVG--PFDQMIAGHARSRGLIIVTNNTREFERVGGL---RTEDWS------
General information:
TITO was launched using:
RESULT:
Template:
3TND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40542 for 971 contacts (-41.8/contact) +
2D Compatibility (PS) -13981 + (NN) -1157 + (LL) 72
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -62058.0 ( -63.91 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_3TND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TND-query.scw
PDB file :
Tito_Scwrl_3TND.pdb
: