Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINP-VLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1ICJ Chain:C ((1-146))
-SVLQVLHIPDERLRKVAKPVE-----EVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD----ERLVLINPELLEKS--GET-----GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ICJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67054 for 1134 contacts (-59.1/contact) +
2D Compatibility (PS) -15629 + (NN) -3005 + (LL) 1676
1D Compatibility (HY) -14800 + (ID) 2800
Total energy: -101612.0 ( -89.60 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1ICJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ICJ-query.scw
PDB file :
Tito_Scwrl_1ICJ.pdb
: