Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDP---RKLLIQVSIAEP--R------AKTRNLRRDPRASILVDADD-G---WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
4ZKY Chain:A ((5-143))
-------FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDE-VATGYALLRAKYHQY------ER------VSLDGPVISVEVSRWASWQA---
General information:
TITO was launched using:
RESULT:
Template:
4ZKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52258 for 877 contacts (-59.6/contact) +
2D Compatibility (PS) -13924 + (NN) -8436 + (LL) 1420
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -79698.0 ( -90.88 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_4ZKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZKY-query.scw
PDB file :
Tito_Scwrl_4ZKY.pdb
: