Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHP----DTQITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPDG---DVLWRPGGDRTAS
1RTY Chain:A ((22-182))
---------------------------KDSLRVESYGTIDELNSFIGLALAELSGQPGFE-DLTAELLTIQHELFDCGGDLAIVT-------DYKLTEESVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKSE--EIHETVLRYLNRLSDYFFAGARVVNARSGIGDVEYERSA-----
General information:
TITO was launched using:
RESULT:
Template:
1RTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98188 for 1165 contacts (-84.3/contact) +
2D Compatibility (PS) -16504 + (NN) -8227 + (LL) 1792
1D Compatibility (HY) -10000 + (ID) 3050
Total energy: -134177.0 ( -115.17 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1RTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTY-query.scw
PDB file :
Tito_Scwrl_1RTY.pdb
: