Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYPLGEALLALYRWRGPLINAGVGGHGYTYLLGAEANRFVFANADAFS-WS--QTFESLVPV-DGPTALIVSDGADHRRRRSVVAPGL-RHHHVQRYVATMVSNIDTVIDGWQP-----GQRLDIYQELRSAVRRSTAESLFGQRLAVHSD-------FLGEQLQPLLDLTRRPPQVMR-LQQRVNSPGWRRAMAARKRIDDLIDAQIADARTAP--RPDDHMLTTLISGCSEEGTTLSDNEIRDSIVSLITAGYETTSGALAWAIYALLTVPGTWESAASEVARVLGGR-VPAADDLSALTYLNGVVHETLRLYSPGVISARRVLRDLWFDGHRIRAGRLLIFSAYVTHRLPEIWPEPTEFRPLRWDPNAADYRKPAPHEFIPFSGGLHRCIGAVMATTEMTVILARLVARAMLQLPAQRTHRIRAANFAALRPWPGLTVEIRKSAPAQ |
| 3K9V Chain:A ((50-482)) | ----QHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIFKSVKPCIDNRLQRYSQQPGADFLCDIYQQ-----DHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEK---KINPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVAT--DNEPVEMLHLGILVPSRELPIAFRPR---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K9V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223867 for 3263 contacts (-68.6/contact) +
2D Compatibility (PS) -44120 + (NN) -18534 + (LL) 972
1D Compatibility (HY) -19200 + (ID) 3850
Total energy: -308599.0 ( -94.58 by residue)
QMean score : 0.404
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