Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLD-VAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
1MK1 Chain:A ((6-207))
-----FETISSETLHTGAIFALRRDQVR-----IVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVA-GEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGR----------TMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
General information:
TITO was launched using:
RESULT:
Template:
1MK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102353 for 1384 contacts (-74.0/contact) +
2D Compatibility (PS) -19845 + (NN) -3268 + (LL) 800
1D Compatibility (HY) -24400 + (ID) 9200
Total energy: -158266.0 ( -114.35 by residue)
QMean score : 0.794
(partial model without unconserved sides chains):
PDB file :
Tito_1MK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK1-query.scw
PDB file :
Tito_Scwrl_1MK1.pdb
: