Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLATIDKFAYEKSMLINVGDEKGTLLDAAVRRADPALALELGTYLGYGALRIAR-AAPEARVYSVELAEANASNARRIWAHAGVDDRVVCVVGTIGDGGRTLDALTEHGFATGTLDFVFLDHDKKAYLPDLQSILDRGWLHPGSIVVADNVRVPGAPKYRAYMRRQQGMSWNTIEHKTHLEYQTLVPDLVLESEYLG
2CL5 Chain:A ((25-204))
VLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD----LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSS--SFECTHYSSYLEYMKVV-----------
General information:
TITO was launched using:
RESULT:
Template:
2CL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92828 for 1405 contacts (-66.1/contact) +
2D Compatibility (PS) -19491 + (NN) -6103 + (LL) 448
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -139074.0 ( -98.99 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2CL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CL5-query.scw
PDB file :
Tito_Scwrl_2CL5.pdb
: