Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTRRDLPQSPYLAAVTGRKPSRVPVWFMRQAGRSLPEYRALRER--YSMLAACFEPDVACEITLQPIRRYDVDAAILFSDIVVPLRAAGVDLDIVADVGPVIADPVRTAADVAAMKPLDPQAIQPVLVAASLLVAELGDVPLIGFAGAPFTLASYLVEGGPSRHHAHVKAMMLAEPASWHALMAKLTDLTIAFLVGQIDAGVDAIQVFDSWAGALSPIDYRQYVLPHSARVFAALGEH-GVPMTHFGVGTAELLGAMSEAVTAGERPGRGAVVGVDWRTPLTDAAARVVPGTALQGNLDPAVVLAGWPAVERAARAVVDDGRRAVDAGAAGHIFNLGHGVLPESDPAVLADLVSLVHSL |
| 2EJA Chain:A ((2-335)) | ------PKNDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYR-KIRNRVKNFLELCKNVDLATEISLLPLKILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKL----SWSGKVSDLKKYDPSQNAYVYEIIKRVKEAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGSSSFIDLAVDYR--------ADALSVDWSVDIPELFKIYD--KGFQGNLEPAVLYASEEVIEEKTLGLLRRI-----PVKTRYVFNLGHGLAPDMELEKVKYLVDLVKSF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2EJA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -267036 for 2861 contacts (-93.3/contact) +
2D Compatibility (PS) -35524 + (NN) -14983 + (LL) 784
1D Compatibility (HY) -28000 + (ID) 5900
Total energy: -350659.0 ( -122.57 by residue)
QMean score : 0.556
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