Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTFSHPHFFRSVLRWLQVGYPEGVPGPDRVALLSLLRSTPLTEEQIGEVVRHFTENGSPAVADRVIDRDEIAEFISEVTHHDAGPENIQRVAGILAAAGWPLAGVDVGESESGSDRAPASQG
2KVC Chain:A ((1-103))
---GSHMNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRR-LSHDEVKAVANELMRLGD-------FDQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA----------
General information:
TITO was launched using:
RESULT:
Template:
2KVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64349 for 699 contacts (-92.1/contact) +
2D Compatibility (PS) -11321 + (NN) -8856 + (LL) 632
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -94844.0 ( -135.69 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_2KVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KVC-query.scw
PDB file :
Tito_Scwrl_2KVC.pdb
: