Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTVYTKPACV------QCSATSKALDKQGIAYQKVDISLDSEARDYVMAL---GYLQAPVVVAGNDHWSGFRPDRIKALAGAALTA
1T1V Chain:A ((2-81))
SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDY--ELFVEAV------
General information:
TITO was launched using:
RESULT:
Template:
1T1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45017 for 467 contacts (-96.4/contact) +
2D Compatibility (PS) -7700 + (NN) -2775 + (LL) 448
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -57694.0 ( -123.54 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1T1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T1V-query.scw
PDB file :
Tito_Scwrl_1T1V.pdb
: