Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
4YC5 Chain:A ((153-234))
---------------------------------------------------------------------------------------------------DGANLHGANLNNANLSEAMLTRANLEQADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA--
General information:
TITO was launched using:
RESULT:
Template:
4YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62501 for 614 contacts (-101.8/contact) +
2D Compatibility (PS) -8564 + (NN) 318 + (LL) 6244
1D Compatibility (HY) -6400 + (ID) 3150
Total energy: -74053.0 ( -120.61 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YC5-query.scw
PDB file :
Tito_Scwrl_4YC5.pdb
: