Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGAN----------AGPDRSLIRAQSWDIDLPNQFE-AAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRE-TTMAGLGELKPVLEG-GIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI |
| 4WYR Chain:B ((5-391)) | ----VIASAVRTAIGSYGKSLKDVPAVDLGATAIKEAVKKAGIKPE----DVNEVILGNVLQAG-LGQNPARQASFKAGLPQEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAPYLANNARWGYRMGNAKFVDEMITDGLWDAFYDYHMGITAENIAERWNISREEQDEFALASQKKAEEAIKSGQFKDEIVPV---VIKGRKGET----VVDTDEHPRFGSTIEGLAKLKPAFKKDGTVTAGNASGLNDCAAVLVIMSAEKAKELGVKPLAKIVSYGSAGVDPKIMGYGPFYATKAAIEKAGWTVDELDLIESNEAFAAQSLAVAKDLKFDMNKVNVNGGAIALGHPIGASGARILVTLVHAMQKRDAKKGLATLCIGGGQGTAILLEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WYR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197200 for 3705 contacts (-53.2/contact) +
2D Compatibility (PS) -40582 + (NN) -18256 + (LL) 744
1D Compatibility (HY) -17600 + (ID) 7400
Total energy: -280294.0 ( -75.65 by residue)
QMean score : 0.439
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