Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAP---VSVSATTTDGLGLTGRGEGLAAIATALVVSLR
3Q8H Chain:C ((25-178))
-----RIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV---
General information:
TITO was launched using:
RESULT:
Template:
3Q8H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139090 for 1269 contacts (-109.6/contact) +
2D Compatibility (PS) -16747 + (NN) -11488 + (LL) 532
1D Compatibility (HY) -8000 + (ID) 3150
Total energy: -177943.0 ( -140.22 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8H-query.scw
PDB file :
Tito_Scwrl_3Q8H.pdb
: