Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSG----VVDTVVVAVPADRT--DEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVL--PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
1W77 Chain:A ((5-224))
-------VSVILLAGG-------SMPKQYIPLLGQPI---ALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDVNSE--LVCIHDSARPLVNTEDVEKV---LKDGSAVGAAVLGVPAKATIKEVNSDSLVV------TLWEMQTPQVIKPELLKKGFELVKSE--GLEVT-DVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL--
General information:
TITO was launched using:
RESULT:
Template:
1W77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134528 for 1511 contacts (-89.0/contact) +
2D Compatibility (PS) -20714 + (NN) -4116 + (LL) 1984
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -175174.0 ( -115.93 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_1W77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W77-query.scw
PDB file :
Tito_Scwrl_1W77.pdb
: