Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MSVEIHLPGATTALPARLDGVVIGVLLDVPDAAAPVVAYPGCPSEHGLAAATTTQLSRADIGAQVALMFVAGDPRQPLLIGRIQRLPQEALAQLDGERLEFSAEREIVLRCGKASITLTRAGKVIIRGAYLSSRSTGVNRIKGGSVQIN--
4DY5 Chain:A ((1-111))
TGKNVNVEFDKGQN--SARYSGVIKGYDYDTYNFQAR--------------KGQKVHVSISNEGADTYLF--GPGISDSVDLSRYSS-------ELDGNG----------------QYTLPASGKYELK-VLQTRNEARKNKAKKYSVNIQIK
General information:
TITO was launched using:
RESULT:
Template:
4DY5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46327 for 740 contacts (-62.6/contact) +
2D Compatibility (PS) -11026 + (NN) -138 + (LL) 3288
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -59853.0 ( -80.88 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_4DY5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DY5-query.scw
PDB file :
Tito_Scwrl_4DY5.pdb
: