Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQL-PRIAAAH----GASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQPYLKAVFEALWVRQ-QNLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTEEA-VRRGVFGAPSFFVGDQ-----------LFFGQDRLDFVAEVLAG
3F4S Chain:A ((40-207))
-PILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDY-------------------------------------------RGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDK
General information:
TITO was launched using:
RESULT:
Template:
3F4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69235 for 1074 contacts (-64.5/contact) +
2D Compatibility (PS) -16225 + (NN) -3196 + (LL) 2564
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -94592.0 ( -88.07 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3F4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4S-query.scw
PDB file :
Tito_Scwrl_3F4S.pdb
: