Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPKTLTPEQRIKELEQQLELMSQ--------------KDQFFETVVDVLKNDYGVSVVKKRSGKSSRKVKSQD--------
2LN3 Chain:A ((1-83))
MGLTRTITSQNKEELLEIALKFISQGLDLEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQKQWQGNKLRIRLKGSLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2LN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 23673 for 342 contacts (69.2/contact) +
2D Compatibility (PS) -6836 + (NN) -5894 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 800
Total energy: 8543.0 ( 24.98 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2LN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LN3-query.scw
PDB file :
Tito_Scwrl_2LN3.pdb
: